Wednesday, 2 November 2011

Goodbye, little dog. (Levi 1996-2011)

Today, my dog-in-law was put down due to failing health. (My wife's dog, Levi, who lived with her parents in Dublin.) I'm not entirely sure why I am blogging about it but I just feel like the little guy deserved a mention.

This picture is possibly a little mean, as he is wearing a bow and not looking his most masculine as a result. It reveals something of his character, though, I think: (generally) well behaved and good fun. He certainly always made me feel welcome whenever I invaded his home.

It also catches him when he was a bit younger and more spritely, taken as it was at Christmas 2007. He was already 11 at this point! We're going back to Dublin this Christmas and it will be strange not to have Levi snuffing at the dining room door while we tuck into the delicious feast that my mother-in-law has laid on.

He made it to 15, or 105 in dog years, which is pretty good going but it is still sad to have to say goodbye to a friend, be they human or animal. He will be missed.

Location:Dublin, Ireland

Tuesday, 1 November 2011

First authorship determined by coin toss!

This week's Science features the most complete and robust mammalian phylogeny to date, in the snappily titled: "Impacts of the Cretaceous Terrestrial Revolution and KPg Extinction on Mammal Diversification" by Jan Janečka et al.*

Apart from the beautiful figures (see the main phylogeny below), the thing that really caught my eye was the unusual superscripting of "First/Last authorship determined by coin toss." Never seen that one before! I've been on a couple of joint first author papers before but we've never had to resort to a coin toss to determine the "first first" and "second first" author order. Then again, they've not been Science papers, so I guess the stakes weren't so high.

*The listed first author is actually Robert Meredith but I thought I would play "parallel universe" for poor Jan Janečka, who missed out on the first author coin toss. (The last author coin toss is not so bad as papers do not get abbreviated to the last author in the same way as the first authorship; this paper will always be "Meredith et al.")

Zombie pumpkins (but not pumpkin zombies)!

Halloween is a time for reanimating the dead, so here are a couple of dead pumpkins from a previous year. First up, the first pumpkin I was involved with. We called him Henry:
The next two don't have names. Mine is the simpler one on the right. (Not sure you can have a zombie ghost!) The fancy one was carved by my wife, the pumpkin expert of our family!

Monday, 31 October 2011

Happy iHalloween

This photo is of the pumpkin that my wife carved for Halloween this year:
It was taken on my iPhone, uploaded to Dropbox, downloaded onto my iPad, cropped using PhotoPad and then blogged with BlogPress*. Isn't technology wonderful?

[*I'm actually a bit annoyed with BlogPress at the moment as it is refusing to pull anything down from online. Hopefully, iOS5 will sort that out, once I can persuade my work PC to let me upgrade. (My recent Windows 7 upgrade has done something strange to iTunes.)]

UK science gives great bang for buck!

One of the great things about going to International conferences is seeing some of the work that goes on "across The Pond". This can be both inspiring and depressing - the scale of some of the work is fantastic but, at the same time, it's the sort of stuff that can only happen on a generous budget.

In the UK, we typically have a smaller pot to play with but that doesn't mean that we don't do good stuff. Indeed, a recent Science news piece highlights two recent studies that show (1) the UK “"attracts more citations per pound spent in overall research and development than any other country", and (2) the UK now tops the charts when "ranked by average number of citations" (see figure). Above and beyond this, some of my beleaguered colleagues should also take heart that "The Thomson Reuters report says that ... biological sciences are the strongest area of U.K. research".

It's easy to get depressed with all the budget cuts but hopefully this will inspire us to keep "punching above our weight". (Or, better still, encourage more funding for what should be a source of national pride.)

(By the way, this image was grabbed from the PDF using iAnnotate on my iPad - a great App whose praises I must later sing.)

Thursday, 27 October 2011

Small but perfectly formed

After my recent post about bobtail squid, I felt that I should give some airtime (if you're using WiFi) to the little ocean critters that I am actually involved with: the beautiful Emiliania huxleyi. It's not really a "critter" as such at all - it's a tiny marine phytoplankton, so it's more like a plant really.

Emiliania huxleyi (fondly known as "E hux") is a "Coccolithophore"; the funky appearance comes from the armoured "coccolith" plates that cover the outside of these tiny single-celled organisms. Nobody really knows what coccoliths are for but they are one of the primary reasons for the interest in species as the plates are made out of calcium carbonate. This makes E hux and its relatives a potentially potent carbon sink despite their minuscule size. (The scale bar in the image is 2μm, which is 1 million times shorter than Darth Vader.) This is because huge numbers of coccoliths sink to the sea floor and ultimately become the chalk of the future.

Although it would seem to make more sense to make these plates externally, they actually make them internally and then export them whole, as this video (of a different coccolithophore) shows. In the words of the experts:
"The coccoliths are rather large relative to the cell size; if scaled up to human size it would be like a person giving birth to a car wheel or a dustbin lid."
The project that I am involved with is primarily concerned with Ocean Acidification, which is one of the lesser-known aspects of climate change due to rising carbon dioxide (CO2). Approx a quarter of atmospheric CO2 is dissolved by the world's oceans. As CO2 levels continue to rise due human activity, the amount of dissolved CO2 therefore also increases. This, in turn, lowers the pH of the ocean, which makes calcium carbonate - the stuff of coccoliths, skeletons and shells - dissolve more easily. The prediction, therefore, is that this will be bad for calcifies, making calcification itself more difficult and reducing the effectiveness of the calcium carbonate structures that they make. (Although we don't yet know what E hux uses its coccoliths for, it's a fair bet that their important.)

The good news is that, as Dr Ian Malcolm would say, "Life finds a way" and so there is every expectation that E hux and friends could evolve and adapt to the elevated CO2 levels. The bad news, though, is that rate of man-made CO2 increase is so fast that they may not have the time and capacity to adapt before the oceans get too acidic for them. It is therefore important that we understand both how calcification is regulated and what the capacity of E hux for adaptation to high CO2 is. Until we get a handle on this, we also don't really know how E hux will respond. Will the increased solubility of the calcium carbonate release more carbon into the ocean, making things even worse? Or, will E hux respond by making thicker coccoliths, incorporating more carbon and help to offset some of the effects of human emissions? (At least, that's my understanding of the main questions.)

In a future post, I'll outline a bit of what we are doing. (I say "we" but my contribution is actually pretty small.) For now, though, just marvel at their coccospherical beauty:

Monday, 24 October 2011

CreatureCast: awesome videos of crazy critters

In an interesting article about the need for evolutionary biology to go viral, I just came across a fascinating website called "CreatureCast", which features videos of crazy and awesome creatures, made by the Dunn Lab at Brown University. I have only watched the jellyfish one so far but it's well worth a watch. Click here or, alternatively, check out this collection on iTunes:

Cover Art

CreatureCast

Dunn Lab

Biology